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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | Brian Cappabianca | 27th | Tied for 1st | 27th | |
| First Basemen | Ryan Rappold | Tied for 10th | Tied for 1st | Tied for 10th | |
| Second Basemen | George McManus | 15th | Tied for 1st | 15th | |
| Third Basemen | Matt Jones | 7th | Tied for 1st | 7th | |
| Shortstops | Ryan McGuffee | 14th | Tied for 1st | 14th | |
| Left Fielders | Bryan Honeycutt | 9th | Tied for 1st | 9th | |
| Center Fielders | Ed Palmerin | 23rd | Tied for 1st | 23rd | |
| Right Fielders | Ian Hamilton | 3rd | Tied for 1st | 3rd | |
| Starting Pitchers | Malik Ragsdale | 25th | Tied for 1st | 25th | |
| Relievers | Willie Gomez | 7th | Tied for 1st | 7th | |
| Closers | Jeff Holden | 16th | Tied for 1st | 16th |
